Ioannis Iliopoulos, PhD

UNIVERSITY OF CRETE

SCHOOL OF HEALTH SCIENCES

FACULTY OF MEDICINE

email:ioannis@iti.gr

 

 

Research Interests

Biocomputing/Bioinformatics. More specifically: Comparative enomics: we study gene order conservation, gene/protein evolution and gene duplications in prokaryotes, eukaryotes and archaea. We also study gene silencing mechanisms in prokaryotes. Text mining/Bibliometrics: We develop algorithms and tools for information retrieval/extraction from very large biological publications/databases such as PubMed and OMIM. We develop tools for genome analysis  and improve existing ones.

 

Publications

1.      Enright A., Iliopoulos I., Kyrpides N. C. and C. A. Ouzounis (1999). Protein interaction maps for complete genomes based on fusion events. Nature. 402. 86-90.

2.      Iliopoulos, S. Tsoka, M. Andrade, P. Janssen, B, Audit, A.Tramontano, A. Valencia, C. Leroy, C. Sander and C. A. Ouzounis. Genome sequences and great expectations. 2000 Dec. GenomeBiology2(1):interactions0001.1-0001.3. (39 ετεροαναφορές). Ηιστοσελίδαστηνοποίαυπάρχειηανάλυσητωνγονιδιωμάτωνεπιλέχτηκεαπότοπεριοδικό Science γιατηστήλη Netwatch.

3.      Iliopoulos I., Enright A. J. and C. A. Ouzounis. “TextQuest: document clustering of medline abstracts for concepts discovery in molecular biology”. Pac. Symp. Biocomput. 6: 384-395 (2001). (38ετεροαναφορές).

4.      Nikolas Papanikolaou, Kalliopi Trachana, Theodosios Theodosiou, Vasilis J.Promponas and Ioannis Iliopoulos. Gene socialization: gene order, GC content and gene silencing in Salmonella. BMC Genomics. 2009 Dec 11;10:59.

5.      Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Ioannis Iliopoulos* and Vasilis J.Promponas*. BioTextQuest: A Web-based Biomedical Text Mining Suite for concept discovery. Bioinformatics. 2011 Oct 12. [Epub ahead of print]. * co co-authorship.